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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010030.1_632_900_F

Intron Information:

Intron Rank:
148634
Intron Class:
major
Intron Phase:
Intron Coordinates:
632 - 900
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTGCCCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
CATGCCTGATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
69.1
0.43
0.9
62.1
33.7
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
43.7
-0.5
2
51.97
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030023
Chromosome:
PEDO01010030.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038933
361 - 1808
1448