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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010070.1_3639_4174_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3639 - 4174
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCAGC
5'SS Class:
major
3'SS Sequence:
TTCTCTCGACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CTTCTCTCGACC
Flanking Amino Acid:
PYKKSSALAKRYNSDRRLSD
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.3
44.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
72
0.5
1
66.5
39.4
Minor 5ss
38.7
-1.3
3.1
52.2
44.6
Minor BPS
56.1
0.17
1.6
67.1
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021893
Chromosome:
PEDO01010070.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027753
2011 - 4947
2937