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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010084.1_1634_1736_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1634 - 1736
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACTGGTG
5'SS Class:
major
3'SS Sequence:
CCCCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTGAA
U12 Branch Point Sequence:
GGGCCGTGAAGA
Flanking Amino Acid:
AGWTPPSSPACSRRKTSASS
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.1
53.5
43.5
Major BPS
48.8
-0
1.2
40.7
40
Major PPT
70.9
0.47
0.7
64.7
23.9
Minor 5ss
32
-2.1
3.8
43.3
46.2
Minor BPS
40.5
-0.7
2.2
47.36
42.1

Associated Gene:

Gene:
RPS6KB2
Ensembl Gene ID:
ENSAPLG00000025888
Chromosome:
PEDO01010084.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029232
101 - 2050
1950