Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010124.1_1567_2243_F

Intron Information:

Intron Rank:

138336

Intron Class:

major

Intron Phase:

Intron Coordinates:

1567 - 2243

Intron Length:

677

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTGAGTTGG

5'SS Class:

major

3'SS Sequence:

TCTGCTCAGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTCAA

U12 Branch Point Sequence:

ATGAACTCAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.5

0.44

1.1

59.1

42.4

Major BPS

69.1

0.48

0.9

69.6

26.6

Major PPT

0.34

1.1

58.5

42.2

Minor 5ss

37.1

-1.5

2.9

50.1

46.1

Minor BPS

54.7

0.22

1.8

73.02

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024432

Chromosome:

PEDO01010124.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034012

1066 - 3920

2855