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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010126.1_12088_13135_R

Intron Information:

Intron Rank:
130288
Intron Class:
major
Intron Phase:
Intron Coordinates:
12088 - 13135
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TGAACCAGGAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
66.7
0.41
1
57.8
39
Major PPT
84
0.76
0.7
77.2
31.6
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
42.6
-0.5
2
59.71
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017306
Chromosome:
PEDO01010126.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020557
10132 - 14114
3983
ENSAPLT00000046147
10132 - 15020
4889