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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010139.1_1469_3081_R

Intron Information:

Intron Rank:
150109
Intron Class:
major
Intron Phase:
Intron Coordinates:
1469 - 3081
Intron Length:
1613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGGC
5'SS Class:
major
3'SS Sequence:
CTCCATCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATCCAT
U12 Branch Point Sequence:
CCATCCCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.7
38.7
Major BPS
57.2
0.18
1.3
68.1
38
Major PPT
71.2
0.48
0.8
64.4
30.7
Minor 5ss
25.8
-2.8
3.2
33.5
42
Minor BPS
56.8
0.21
1.7
63.87
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028331
Chromosome:
PEDO01010139.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036334
164 - 3762
3599