Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010142.1_416_569_R

Intron Information:

Intron Rank:

135978

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

416 - 569

Intron Length:

154

Sequence Information:

Terminal Dinucleotides:

GT-GG

5'SS Sequence:

GGG|GTCATTTTG

5'SS Class:

major

3'SS Sequence:

TAGAGGTTTTGGG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCAGAG

U12 Branch Point Sequence:

TGTAGCAGAGGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.9

0.28

1.4

62.5

44.6

Major BPS

40.6

-0.5

1.4

32.2

34.8

Major PPT

30.5

-1.1

3.3

46.5

49.5

Minor 5ss

38.9

-1.3

2.8

44.5

Minor BPS

34.5

-1.2

2.2

46.01

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020588

Chromosome:

PEDO01010142.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043431

21 - 1123

1103