Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010169.1_1795_1937_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1795 - 1937

Intron Length:

143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGCGTGCC

5'SS Class:

major

3'SS Sequence:

GGCATTTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAC

U12 Branch Point Sequence:

ACTGCTGTAACG

Flanking Amino Acid:

LRAAAVAPMHGVIAALRRCL

Intron Amino Acid Position:

880

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

60.8

38.5

Major BPS

62.2

0.3

1.2

38.7

Major PPT

67.3

0.39

1.1

60.9

44.5

Minor 5ss

27.9

-2.5

3.2

Minor BPS

48.6

-0.2

2.2

56.74

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021821

Chromosome:

PEDO01010169.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031257

21 - 7414

7394