Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010169.1_2099_2298_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2099 - 2298

Intron Length:

200

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTATGAGCT

5'SS Class:

major

3'SS Sequence:

CCTCTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTCAC

U12 Branch Point Sequence:

TTGTACTCACAG

Flanking Amino Acid:

GAVLMKTILQKSDGSTMKIL

Intron Amino Acid Position:

826

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

35.2

Major BPS

77.2

0.68

0.8

77.6

26.2

Major PPT

82.3

0.73

0.7

76.6

25.4

Minor 5ss

40.9

-1

3.4

57.1

41.5

Minor BPS

44.5

-0.5

2.1

54.02

46.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021821

Chromosome:

PEDO01010169.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031257

21 - 7414

7394