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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010169.1_2460_2536_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2460 - 2536
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTCGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCTAC
U12 Branch Point Sequence:
GTGTCCCTACTC
Flanking Amino Acid:
LSCLQDSTNEIRDLASELLV
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
75.7
34.4
Major BPS
48.5
-0
1.3
46.3
38.4
Major PPT
69.9
0.45
1
65.6
36
Minor 5ss
30.4
-2.2
3.5
42.4
45.1
Minor BPS
49.9
-0
2
63.65
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021821
Chromosome:
PEDO01010169.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031257
21 - 7414
7394