Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010169.1_278_427_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

278 - 427

Intron Length:

150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCTGTGC

5'SS Class:

major

3'SS Sequence:

TTTTGTTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTGGAT

U12 Branch Point Sequence:

GGGGTCTGGATG

Flanking Amino Acid:

QAIPQTMLDQGLEALSGPRS

Intron Amino Acid Position:

1071

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.5

0.34

1.1

53.9

40.1

Major BPS

58.9

0.22

1.5

59.3

47.1

Major PPT

89.1

0.88

0.7

88.2

29.1

Minor 5ss

30.6

-2.2

3.4

41.7

Minor BPS

43.4

-0.6

1.5

39.53

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021821

Chromosome:

PEDO01010169.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031257

21 - 7414

7394