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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010169.1_3656_3773_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3656 - 3773
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAG
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGCTCCTCACAG
Flanking Amino Acid:
AIIPYVGSQQVLDTYPELPQ
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.6
42.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
73.7
0.53
0.8
65.2
36.3
Minor 5ss
30.2
-2.3
3.3
38.2
47
Minor BPS
47
-0.3
2
53.72
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021821
Chromosome:
PEDO01010169.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031257
21 - 7414
7394