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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010169.1_4718_4989_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4718 - 4989
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CACTCACTGACA
Flanking Amino Acid:
SCRLDSPTQQACLLLDVLFP
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
64.9
0.37
1
67
29.8
Major PPT
80.2
0.68
0.9
74
36.8
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
47.1
-0.2
2
57.32
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021821
Chromosome:
PEDO01010169.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031257
21 - 7414
7394