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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010169.1_5523_5722_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5523 - 5722
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGAGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
GTGTTTTGAGCT
Flanking Amino Acid:
GLLLEVVAGKAPSKDTQLLA
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
72.4
39.2
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
66.2
0.37
1
57.9
42
Minor 5ss
29.8
-2.3
3.4
39.7
46.3
Minor BPS
50.5
0.09
1.7
68.99
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021821
Chromosome:
PEDO01010169.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031257
21 - 7414
7394