Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010218.1_34923_35210_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

34923 - 35210

Intron Length:

288

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAGGACGG

5'SS Class:

strong_major

3'SS Sequence:

CAACACGTCCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GATCTAT

U12 Branch Point Sequence:

CTGGCACCAACA

Flanking Amino Acid:

WDAAGTNRSKAGRDPVGITK

Intron Amino Acid Position:

574

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.84

60.3

43.9

Major BPS

49.3

-0

1.4

50.5

44.9

Major PPT

48.4

-0

1.1

40.9

37.7

Minor 5ss

19.6

-3.5

3.8

29.7

43.1

Minor BPS

-0.6

2.1

53.4

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024164

Chromosome:

PEDO01010218.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022866

31152 - 40844

9693