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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010218.1_37408_37542_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37408 - 37542
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCGT
5'SS Class:
major
3'SS Sequence:
GTCTCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TCTCCCTGCACT
Flanking Amino Acid:
HMEDTSVACTGTPTLRLVGA
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
57.8
46.6
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
77
0.61
0.8
69
37.1
Minor 5ss
30.8
-2.2
3.6
47.8
47.7
Minor BPS
57.8
0.32
2
78.42
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024164
Chromosome:
PEDO01010218.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022866
31152 - 40844
9693
ENSAPLT00000020955
31152 - 38371
7220
ENSAPLT00000035940
31152 - 39146
7995