Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010218.1_37621_37708_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37621 - 37708

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

GACTGTCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTGAC

U12 Branch Point Sequence:

GTGACACCGACT

Flanking Amino Acid:

STTTTSTPAPGDMTPRPAGG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

36.6

Major BPS

51.2

0.03

1.2

44.4

38.7

Major PPT

68.6

0.42

0.9

61.4

39.7

Minor 5ss

29.1

-2.4

3.2

37.3

42.5

Minor BPS

41.4

-0.5

2.1

59.56

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024164

Chromosome:

PEDO01010218.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022866

31152 - 40844

9693

ENSAPLT00000020955

31152 - 38371

7220