Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010218.1_69955_70060_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

69955 - 70060

Intron Length:

106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

CCCCAAATCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCAAAT

U12 Branch Point Sequence:

TGTCCCCCAAAT

Flanking Amino Acid:

HAVALTPPGQGWPPAVLDAG

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.5

42.7

Major BPS

52.4

0.06

1.1

58.8

34.5

Major PPT

62.9

0.29

0.9

35.8

Minor 5ss

28.9

-2.4

3.3

37.6

47.1

Minor BPS

49.2

0.02

73.57

42.1

Associated Gene:

Gene:

LIG1

Ensembl Gene ID:

ENSAPLG00000013201

Chromosome:

PEDO01010218.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013746

68990 - 72994

4005