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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010218.1_71085_71185_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71085 - 71185
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CACCCCACCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAACAA
U12 Branch Point Sequence:
CCCCCCCCAACA
Flanking Amino Acid:
FQVLMTRKRKDVDAAAIKVQ
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
44.8
-0.3
1
46.9
34.5
Major PPT
62.2
0.27
0.8
54.6
28.7
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
46.1
-0.3
1.9
53.63
44.5

Associated Gene:

Gene:
LIG1
Ensembl Gene ID:
ENSAPLG00000013201
Chromosome:
PEDO01010218.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013746
68990 - 72994
4005