Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010218.1_71900_71976_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71900 - 71976

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGACCCCT

5'SS Class:

major

3'SS Sequence:

TCCTTCCATGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTCCAT

U12 Branch Point Sequence:

CCGTCCCGAACC

Flanking Amino Acid:

ESEEYQSICKIGTGFTEESL

Intron Amino Acid Position:

489

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.2

62.3

43.9

Major BPS

0.37

1.3

76.1

Major PPT

78.5

0.64

0.8

73.5

30.4

Minor 5ss

40.6

-1

3.1

57.5

46.7

Minor BPS

49.7

-0

1.9

59.75

45.1

Associated Gene:

Gene:

LIG1

Ensembl Gene ID:

ENSAPLG00000013201

Chromosome:

PEDO01010218.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013746

68990 - 72994

4005