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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010273.1_993_1229_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
993 - 1229
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAAGAC
U12 Branch Point Sequence:
GCTGCAAAGACT
Flanking Amino Acid:
LARFGLIQSMKELDSGLAEA
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
75.2
35.7
Major BPS
45
-0.3
1
36.4
29.3
Major PPT
69.5
0.44
0.9
61.8
40
Minor 5ss
48.2
-0.2
2.8
66.3
38.7
Minor BPS
40.6
-0.6
2.2
57.89
44.9

Associated Gene:

Gene:
IST1
Ensembl Gene ID:
ENSAPLG00000015202
Chromosome:
PEDO01010273.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015839
86 - 1737
1652