About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010280.1_4040_4165_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4040 - 4165
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTGCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTGGCTCTGACA
Flanking Amino Acid:
TFSFFSIFSWGLLLAFAYKR
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
74.5
0.55
0.8
64.7
36.5
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
48.1
-0.1
1.8
58.23
42

Associated Gene:

Gene:
SYNGR2
Ensembl Gene ID:
ENSAPLG00000012174
Chromosome:
PEDO01010280.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012668
3822 - 4798
977