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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010280.1_718_799_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
718 - 799
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
CGTCTTGGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAGAA
U12 Branch Point Sequence:
GCCAACAGAACC
Flanking Amino Acid:
AALDGTFQRKAFGSILNLVP
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.4
39.3
Major BPS
49.3
-0
0.9
44.7
28.3
Major PPT
65.5
0.35
1
59.7
40.6
Minor 5ss
30.4
-2.2
3.4
41
45.6
Minor BPS
42
-0.6
1.8
47.1
41.2

Associated Gene:

Gene:
TK1
Ensembl Gene ID:
ENSAPLG00000018568
Chromosome:
PEDO01010280.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033668
21 - 2601
2581