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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010282.1_2436_3052_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2436 - 3052
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTTAATCCG
5'SS Class:
weak_major
3'SS Sequence:
ATTTAATCCGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCAGATTTAATC
Flanking Amino Acid:
SIQIPSHVNPIQSRFHHMST
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.22
1.3
53.7
43.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
51.6
0.04
1.7
59.5
41
Minor 5ss
32.7
-2
2.8
39.8
38.5
Minor BPS
48.3
-0.1
1.6
51.11
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021619
Chromosome:
PEDO01010282.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028530
671 - 3089
2419