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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010283.1_106_224_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
106 - 224
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCGGGGGGA
5'SS Class:
major
3'SS Sequence:
AAATGAATCCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AATAAATGAATC
Flanking Amino Acid:
CLALQGALRGRRSSCWE
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.3
56.4
38.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
48.1
-0.1
1.1
39.7
42
Minor 5ss
11.9
-4.4
3.7
18.9
38.2
Minor BPS
44.8
-0.4
1.8
54.71
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028573
Chromosome:
PEDO01010283.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028110
87 - 1019
933