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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010293.1_365_452_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
365 - 452
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
GTGTGCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCGAG
U12 Branch Point Sequence:
GGGTCCCGAGCC
Flanking Amino Acid:
AFRMEDSRLKVWDIIGRSVV
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
43
-0.4
1.6
40.1
42
Major PPT
65.5
0.35
1
55
41.4
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
44.6
-0.4
2
54.22
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017104
Chromosome:
PEDO01010293.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048180
97 - 560
464