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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010346.1_2148_2591_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2148 - 2591
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTGTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
AACTGCTTCACA
Flanking Amino Acid:
SCCFPCCLQEIEIQAPPGTP
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
69.3
0.43
1.1
71.2
33.4
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
49.3
-0
2.2
62.56
43.7

Associated Gene:

Gene:
PLSCR1
Ensembl Gene ID:
ENSAPLG00000018167
Chromosome:
PEDO01010346.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024650
629 - 3225
2597