About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010346.1_966_1985_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
966 - 1985
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTAAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTTATTAAAC
Flanking Amino Acid:
CSCCEDVNFEVKTLDEISTI
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.7
35.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
70.7
0.47
1.1
64.7
44.7
Minor 5ss
47.1
-0.3
2.6
65.5
45.8
Minor BPS
62.5
0.37
1.7
73.64
36.3

Associated Gene:

Gene:
PLSCR1
Ensembl Gene ID:
ENSAPLG00000018167
Chromosome:
PEDO01010346.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024650
629 - 3225
2597