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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010347.1_641_732_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
641 - 732
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
AAACCCCCCCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAGGAT
U12 Branch Point Sequence:
TCCCCCCCAAAC
Flanking Amino Acid:
EGRFPGMLDVSGQGTPEVTG
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
59.7
0.24
1.5
59.7
46.7
Major PPT
59.3
0.21
0.9
48
35.5
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
44.9
-0.4
1.9
54.36
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030025
Chromosome:
PEDO01010347.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025076
297 - 1249
953