Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010348.1_1103_1731_F

Intron Information:

Intron Rank:

127659

Intron Class:

major

Intron Phase:

Intron Coordinates:

1103 - 1731

Intron Length:

629

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

TCAATAATTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TTTTCAATAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

68.2

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

70.4

0.46

62.5

Minor 5ss

33.1

-1.9

3.2

43.9

43.7

Minor BPS

67.9

0.64

1.8

90.51

32.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018826

Chromosome:

PEDO01010348.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028233

21 - 3043

3023