Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010421.1_1902_3314_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1902 - 3314

Intron Length:

1413

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGCCC

5'SS Class:

major

3'SS Sequence:

CTTGTCCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CACCCCTCACCT

Flanking Amino Acid:

GVKVYEDELKVVHAVSAEAG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

1.1

64.9

37.8

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

75.9

0.58

0.8

69.8

Minor 5ss

30.6

-2.2

3.5

42.1

44.9

Minor BPS

-0

1.9

62.78

46.8

Associated Gene:

Gene:

PALM

Ensembl Gene ID:

ENSAPLG00000027852

Chromosome:

PEDO01010421.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044090

1333 - 3611

2279