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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010479.1_663_802_F

Intron Information:

Intron Rank:
124611
Intron Class:
major
Intron Phase:
Intron Coordinates:
663 - 802
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
CCCTTCTCAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
63.6
0.31
0.7
57.5
18.7
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
48.6
-0
1.8
63.07
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017181
Chromosome:
PEDO01010479.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027673
21 - 1207
1187