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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010515.1_4609_5014_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4609 - 5014

Intron Length:

406

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CCG|GCTGGGCTT

5'SS Class:

weak_major

3'SS Sequence:

GAAGCCGGCACAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCCGAA

U12 Branch Point Sequence:

GCCCCCCGAAGC

Flanking Amino Acid:

SLQRDPCPAAAAAPGTQRPP

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.5

0.23

1.4

61.5

43.3

Major BPS

43.9

-0.3

1.2

35.7

32.2

Major PPT

48.9

-0

1.1

38.1

39.4

Minor 5ss

21.8

-3.2

4.2

40.2

45.6

Minor BPS

41.5

-0.6

46.2

42.1

Associated Gene:

Gene:

PAX4

Ensembl Gene ID:

ENSAPLG00000020399

Chromosome:

PEDO01010515.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033544

2151 - 5887

3737