Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010515.1_5138_5237_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5138 - 5237

Intron Length:

100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGGGCT

5'SS Class:

major

3'SS Sequence:

GGCCCCCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTGCAC

U12 Branch Point Sequence:

GCTGATTGCACC

Flanking Amino Acid:

SSQQSEALEEEFRRGQYPDT

Intron Amino Acid Position:

157

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

66.7

38.8

Major BPS

56.3

0.16

1.4

69.1

37.9

Major PPT

69.7

0.44

0.9

61.4

34.9

Minor 5ss

25.3

-2.8

3.6

38.6

46.6

Minor BPS

40.8

-0.7

48.34

41.6

Associated Gene:

Gene:

PAX4

Ensembl Gene ID:

ENSAPLG00000020399

Chromosome:

PEDO01010515.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033544

2151 - 5887

3737