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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010519.1_254_970_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
254 - 970
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
CCCCCCCGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCAAAA
U12 Branch Point Sequence:
CCACCCCAAAAA
Flanking Amino Acid:
VFSCSSSPAAAQRWSKRDQK
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
60
46.2
Major BPS
47.3
-0.1
1
50.8
30.3
Major PPT
61.8
0.27
0.9
52.7
31.1
Minor 5ss
28.7
-2.4
2.8
33.1
41.8
Minor BPS
41.9
-0.6
2
47.62
42

Associated Gene:

Gene:
ANKRD35
Ensembl Gene ID:
ENSAPLG00000018639
Chromosome:
PEDO01010519.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039071
215 - 5077
4863