Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010541.1_1504_1578_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1504 - 1578

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCCC

5'SS Class:

strong_major

3'SS Sequence:

ATCTCCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

CCCACCCCAACC

Flanking Amino Acid:

VLDPTTRQEQEARAVLTFAI

Intron Amino Acid Position:

104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

65.8

40.2

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

74.6

0.55

0.8

35.2

Minor 5ss

33.7

-1.9

42.6

44.4

Minor BPS

45.4

-0.3

1.9

52.02

Associated Gene:

Gene:

EXOSC5

Ensembl Gene ID:

ENSAPLG00000026665

Chromosome:

PEDO01010541.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021491

1221 - 2095

875