Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010544.1_96_207_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

96 - 207

Intron Length:

112

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGCGCG

5'SS Class:

major

3'SS Sequence:

GCCTCCCCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCGTGAC

U12 Branch Point Sequence:

CGCGCCGTGACC

Flanking Amino Acid:

MALICSISNEVPEHPC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.5

0.32

1.1

50.8

40.5

Major BPS

48.6

-0

1.2

40.4

Major PPT

67.8

0.4

0.8

57.8

33.2

Minor 5ss

33.4

-1.9

3.3

44.5

44.1

Minor BPS

46.1

-0.3

2.2

53.77

44.7

Associated Gene:

Gene:

PRPF19

Ensembl Gene ID:

ENSAPLG00000018059

Chromosome:

PEDO01010544.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020277

77 - 2104

2028