About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010553.1_1452_1852_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1452 - 1852
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
CTCTGTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTACCTACCT
Flanking Amino Acid:
LSKAEKRNARIRAYRKIQEL
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
75.9
39.9
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
82
0.72
0.8
75.5
33.1
Minor 5ss
47.5
-0.2
2.9
72.4
38
Minor BPS
57.7
0.32
2.1
85.95
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010638
Chromosome:
PEDO01010553.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011070
472 - 2765
2294