Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010553.1_2029_2649_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2029 - 2649

Intron Length:

621

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGCAATA

5'SS Class:

major

3'SS Sequence:

GTTCTCTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGTTAAC

U12 Branch Point Sequence:

TGTAGGTTAACT

Flanking Amino Acid:

AGETPKDVAKRFAQLAAVEL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.2

71.7

40.1

Major BPS

56.7

0.17

1.3

61.4

43.2

Major PPT

83.2

0.75

0.8

77.4

31.3

Minor 5ss

41.2

-1

3.3

57.4

46.9

Minor BPS

50.3

0.09

2.5

77.46

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010638

Chromosome:

PEDO01010553.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011070

472 - 2765

2294