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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010558.1_2634_2903_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2634 - 2903
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGCCAA
U12 Branch Point Sequence:
CGGAGGCCAACC
Flanking Amino Acid:
GSRSAFPGLPGEVVLEEAAG
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
41.7
-0.5
1.3
41.9
40.4
Major PPT
67.4
0.39
0.8
60.5
29.4
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
31.1
-1.4
2.3
36.54
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024837
Chromosome:
PEDO01010558.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023247
199 - 3063
2865