About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010586.1_151_255_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151 - 255
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCGCTCTGACCC
Flanking Amino Acid:
KVVSVRYDPCRSADIALVAG
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
79.2
32.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
64
0.32
1.1
60.9
40.2
Minor 5ss
24.9
-2.9
3.7
34.6
41.4
Minor BPS
44.6
-0.4
1.7
47.55
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018371
Chromosome:
PEDO01010586.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041195
21 - 1776
1756