Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010589.1_323_726_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

323 - 726

Intron Length:

404

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGCGTG

5'SS Class:

major

3'SS Sequence:

CCTCTCTTCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAAGGAT

U12 Branch Point Sequence:

ATGACAGTAGCG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

61.5

43.2

Major BPS

47.3

-0.1

1.3

43.5

39.2

Major PPT

79.8

0.67

0.7

32.6

Minor 5ss

46.2

-0.4

3.2

60.4

45.8

Minor BPS

40.1

-0.8

2.3

47.84

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024428

Chromosome:

PEDO01010589.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028286

21 - 2892

2872