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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010601.1_419_943_R

Intron Information:

Intron Rank:
154603
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
419 - 943
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AA
5'SS Sequence:
GAG|GTCCCCAAA
5'SS Class:
weak_major
3'SS Sequence:
AAATTTTTTGGAA|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTTTTTAGGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.9
0.07
1.5
56.2
44.7
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
35.4
-0.8
3.4
58.5
46.2
Minor 5ss
38.6
-1.3
3
49.2
46.6
Minor BPS
61.6
0.44
1.8
82.89
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030750
Chromosome:
PEDO01010601.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038080
21 - 1026
1006