Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010626.1_1140_1365_R

Intron Information:

Intron Rank:

145497

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1140 - 1365

Intron Length:

226

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTTGGCGAG

5'SS Class:

weak_major

3'SS Sequence:

TGGTTGGCAAGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAGTCAA

U12 Branch Point Sequence:

TTGGCATGAAGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.19

1.3

42.5

Major BPS

0.23

1.1

61.4

36.2

Major PPT

45.6

-0.2

1.7

46.9

44.9

Minor 5ss

30.8

-2.2

3.4

35.2

42.7

Minor BPS

47.6

-0.1

2.1

69.86

46.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025675

Chromosome:

PEDO01010626.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035385

1024 - 2272

1249