Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010626.1_457_619_F

Intron Information:

Intron Rank:

129100

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

457 - 619

Intron Length:

163

Sequence Information:

Terminal Dinucleotides:

GT-TG

5'SS Sequence:

GAG|GTATCATGG

5'SS Class:

weak_major

3'SS Sequence:

GGCTGCCTTGGTG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGTCAT

U12 Branch Point Sequence:

CGGGGTGTCATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

1.2

43.9

Major BPS

67.1

0.42

1.4

71.4

45.1

Major PPT

31.7

-1

3.3

46.3

41.5

Minor 5ss

-0.1

2.6

65.2

Minor BPS

29.7

-1.7

2.2

37.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019454

Chromosome:

PEDO01010626.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028243

21 - 1781

1761