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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010633.1_1712_1827_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1712 - 1827
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCAGCAGGG
5'SS Class:
weak_major
3'SS Sequence:
CCACCATCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGACAC
U12 Branch Point Sequence:
ACACCACCATCT
Flanking Amino Acid:
KIMRKVTLGGCTSRPRMKKK
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.24
1.3
50.1
43.3
Major BPS
47
-0.1
1.3
52.4
43.3
Major PPT
68.4
0.42
0.9
58.1
37.2
Minor 5ss
23.8
-3
4.3
34.7
43.7
Minor BPS
37.2
-0.8
2
51.59
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030351
Chromosome:
PEDO01010633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034555
853 - 2093
1241