About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010639.1_8194_16338_R

Intron Information:

Intron Rank:
133388
Intron Class:
major
Intron Phase:
Intron Coordinates:
8194 - 16338
Intron Length:
8145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCATCGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
71.7
0.49
1
67.5
37.8
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
54.8
0.23
2
75.63
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019010
Chromosome:
PEDO01010639.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030405
8100 - 17293
9194