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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010640.1_129_613_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
129 - 613
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTTTTTGGG
5'SS Class:
weak_major
3'SS Sequence:
GCCTCCTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGGGAC
U12 Branch Point Sequence:
TTTTTGGGGACC
Flanking Amino Acid:
IAGCSGEVWSRTLCPFLGTL
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.3
0.08
1.3
45
42.7
Major BPS
43.6
-0.4
1.4
36.7
42.3
Major PPT
77.9
0.63
0.8
68.5
37.3
Minor 5ss
35.1
-1.7
3
42.1
44.7
Minor BPS
42.7
-0.5
2.6
65.55
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030355
Chromosome:
PEDO01010640.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030575
54 - 2475
2422