About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010642.1_1099_3169_R

Intron Information:

Intron Rank:
151523
Intron Class:
major
Intron Phase:
Intron Coordinates:
1099 - 3169
Intron Length:
2071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TGGGCACTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
86.8
0.83
0.7
79.5
32.5
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
40.5
-0.6
2.2
58.28
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029089
Chromosome:
PEDO01010642.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045420
22 - 3429
3408