Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010651.1_4471_4565_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4471 - 4565

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGTGAGTG

5'SS Class:

major

3'SS Sequence:

CGTGGACCCCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTCCAC

U12 Branch Point Sequence:

ACGCCGTGGACC

Flanking Amino Acid:

ALVHRFRPDLDPVGIHQLML

Intron Amino Acid Position:

115

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

60.3

38.4

Major BPS

67.4

0.43

1.3

78.4

35.2

Major PPT

59.3

0.21

47.4

40.7

Minor 5ss

34.8

-1.7

3.4

43.2

45.5

Minor BPS

43.2

-0.5

2.1

49.98

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028087

Chromosome:

PEDO01010651.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040332

4129 - 4700

572